IL_6C5L_303

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6C5L|1|DA|A|1938, 6C5L|1|DA|U|1944, 6C5L|1|DA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_303 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1309

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

6C5L|1|DA|C|1934
6C5L|1|DA|G|1935
6C5L|1|DA|A|1936
6C5L|1|DA|A|1937
6C5L|1|DA|A|1938
6C5L|1|DA|U|1939
6C5L|1|DA|U|1940
6C5L|1|DA|C|1941
6C5L|1|DA|C|1942
6C5L|1|DA|U|1943
6C5L|1|DA|U|1944
6C5L|1|DA|G|1945
*
6C5L|1|DA|C|1961
6C5L|1|DA|C|1962
6C5L|1|DA|U|1963
6C5L|1|DA|G|1964

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CY

Peptide chain release factor 2

Chain DD

50S ribosomal protein L2