IL_6C5L_307

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6C5L|1|DA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_307 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.0862

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6C5L|1|DA|G|2070
6C5L|1|DA|A|2071
*
6C5L|1|DA|U|2438
6C5L|1|DA|A|2439
6C5L|1|DA|C|2440
6C5L|1|DA|C|2441

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain CY

Peptide chain release factor 2

Chain DD

50S ribosomal protein L2