3D structure

PDB id
6C5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAGAG*UGGU
Length
9 nucleotides
Bulged bases
6C5L|1|CA|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6C5L_366 not in the Motif Atlas
Homologous match to IL_6CZR_141
Geometric discrepancy: 0.105
The information below is about IL_6CZR_141
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
36

Unit IDs

6C5L|1|CA|G|662
6C5L|1|CA|A|663
6C5L|1|CA|G|664
6C5L|1|CA|A|665
6C5L|1|CA|G|666
*
6C5L|1|CA|U|740
6C5L|1|CA|G|741
6C5L|1|CA|G|742
6C5L|1|CA|U|743

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CF
30S ribosomal protein S6
Chain CO
30S ribosomal protein S15
Chain CR
30S ribosomal protein S18

Coloring options:


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