IL_6C5L_383

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6C5L|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_383 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.3623

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6C5L|1|BA|C|2129
6C5L|1|BA|U|2130
6C5L|1|BA|G|2131
6C5L|1|BA|U|2132
6C5L|1|BA|G|2133
6C5L|1|BA|A|2134
6C5L|1|BA|A|2135
6C5L|1|BA|C|2136
*
6C5L|1|BA|G|2155
6C5L|1|BA|G|2156
6C5L|1|BA|G|2157
6C5L|1|BA|A|2158
6C5L|1|BA|G|2159

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L1