IL_6CAE_086

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6CAE|1|1A|U|2154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAE_086 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.407

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

6CAE|1|1A|C|2151
6CAE|1|1A|U|2152
6CAE|1|1A|G|2153
6CAE|1|1A|U|2154
6CAE|1|1A|G|2155
6CAE|1|1A|A|2156
6CAE|1|1A|A|2157
6CAE|1|1A|C|2158
*
6CAE|1|1A|G|2177
6CAE|1|1A|G|2178
6CAE|1|1A|G|2179
6CAE|1|1A|A|2180
6CAE|1|1A|G|2181

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains