3D structure

PDB id
6CAP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
6CAP|1|A|U|244, 6CAP|1|A|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CAP_011 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.1115
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

6CAP|1|A|C|242
6CAP|1|A|A|243
6CAP|1|A|U|244
6CAP|1|A|C|245
6CAP|1|A|A|246
6CAP|1|A|G|247
*
6CAP|1|A|C|277
6CAP|1|A|G|278
6CAP|1|A|A|279
6CAP|1|A|C|280
6CAP|1|A|G|281
6CAP|1|A|A|282
6CAP|1|A|C|283
6CAP|1|A|G|284

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain Q
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3224 s
Application loaded.