IL_6CAR_050

3D structure

PDB id

6CAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

6CAR|1|A|U|1278, 6CAR|1|A|A|1280, 6CAR|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAR_050 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.167

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6CAR|1|A|G|1255
6CAR|1|A|A|1256
6CAR|1|A|U|1257
6CAR|1|A|G|1258
*
6CAR|1|A|C|1277
6CAR|1|A|U|1278
6CAR|1|A|A|1279
6CAR|1|A|A|1280
6CAR|1|A|U|1281
6CAR|1|A|C|1282

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14 type Z