IL_6CB1_024

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AUC*GAUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CB1_024 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3548

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6CB1|1|1|A|755
6CB1|1|1|U|756
6CB1|1|1|C|757
*
6CB1|1|1|G|774
6CB1|1|1|A|775
6CB1|1|1|U|776
6CB1|1|1|U|777

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Nearby chains