IL_6CB1_054

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAU*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CB1_054 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.1673

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6CB1|1|1|G|1618
6CB1|1|1|A|1619
6CB1|1|1|U|1620
*
6CB1|1|1|G|1825
6CB1|1|1|C|1826

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain k

60S ribosomal protein L38