IL_6CFJ_217

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

6CFJ|1|2A|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFJ_217 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3973

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6CFJ|1|2A|G|1319
6CFJ|1|2A|C|1320
6CFJ|1|2A|A|1321
6CFJ|1|2A|A|1322
6CFJ|1|2A|U|1323
6CFJ|1|2A|G|1324
*
6CFJ|1|2A|C|1330
6CFJ|1|2A|A|1331
6CFJ|1|2A|G|1332
6CFJ|1|2A|C|1333

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2X

50S ribosomal protein L23