IL_6CFK_167

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_167 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0854

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6CFK|1|1a|C|1303
6CFK|1|1a|G|1304
6CFK|1|1a|G|1305
6CFK|1|1a|A|1306
6CFK|1|1a|U|1307
6CFK|1|1a|U|1308
*
6CFK|1|1a|A|1329
6CFK|1|1a|U|1330
6CFK|1|1a|G|1331
6CFK|1|1a|A|1332
6CFK|1|1a|A|1333
6CFK|1|1a|G|1334

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1u

30S ribosomal protein Thx