IL_6CFL_170

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_170 not in the Motif Atlas

Geometric match to IL_4WF9_084

Geometric discrepancy: 0.383

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6CFL|1|1a|G|1405
6CFL|1|1a|U|1406
6CFL|1|1a|5MC|1407
6CFL|1|1a|A|1408
6CFL|1|1a|C|1409
*
6CFL|1|1a|G|1491
6CFL|1|1a|A|1492
6CFL|1|1a|A|1493
6CFL|1|1a|G|1494
6CFL|1|1a|U|1495
6CFL|1|1a|C|1496

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1l

30S ribosomal protein S12

Chain 1y

Protein Y