IL_6CFL_309

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6CFL|1|2a|A|532, 6CFL|1|2a|U|534, 6CFL|1|2a|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_309 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2241

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6CFL|1|2a|G|515
6CFL|1|2a|PSU|516
6CFL|1|2a|G|517
6CFL|1|2a|C|518
6CFL|1|2a|C|519
6CFL|1|2a|A|520
6CFL|1|2a|G|521
*
6CFL|1|2a|C|528
6CFL|1|2a|G|529
6CFL|1|2a|G|530
6CFL|1|2a|U|531
6CFL|1|2a|A|532
6CFL|1|2a|A|533
6CFL|1|2a|U|534
6CFL|1|2a|A|535
6CFL|1|2a|C|536

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2y

Protein Y