IL_6CK4_009

3D structure

PDB id

6CK4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGC*GUGUU

Length

8 nucleotides

Bulged bases

6CK4|1|B|U|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CK4_009 not in the Motif Atlas

Geometric match to IL_3KTW_002

Geometric discrepancy: 0.2115

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6CK4|1|B|A|22
6CK4|1|B|G|23
6CK4|1|B|C|24
*
6CK4|1|B|G|35
6CK4|1|B|U|36
6CK4|1|B|G|37
6CK4|1|B|U|38
6CK4|1|B|U|39

Current chains

Chain B

PRPP riboswitch

Nearby chains

Chain A

PRPP riboswitch