IL_6CK5_012

3D structure

PDB id

6CK5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

PRPP riboswitch from T. mathranii bound to PRPP

Experimental method

X-RAY DIFFRACTION

Resolution

2.49 Å

Loop

Sequence

CAG*UGUUCG

Length

9 nucleotides

Bulged bases

6CK5|1|B|U|38, 6CK5|1|B|C|40

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CK5_012 not in the Motif Atlas

Homologous match to IL_6CK5_011

Geometric discrepancy: 0.4269

The information below is about IL_6CK5_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95570.1

Basepair signature

cWW-cWH-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6CK5|1|B|C|21
6CK5|1|B|A|22
6CK5|1|B|G|23
*
6CK5|1|B|U|36
6CK5|1|B|G|37
6CK5|1|B|U|38
6CK5|1|B|U|39
6CK5|1|B|C|40
6CK5|1|B|G|41

Current chains

Chain B

PRPP riboswitch

Nearby chains

Chain A

Guanidine-I riboswitch