IL_6CZR_245

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6CZR|1|2A|A|1959, 6CZR|1|2A|U|1965, 6CZR|1|2A|U|1984

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_245 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1407

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6CZR|1|2A|C|1955
6CZR|1|2A|G|1956
6CZR|1|2A|A|1957
6CZR|1|2A|A|1958
6CZR|1|2A|A|1959
6CZR|1|2A|5MU|1960
6CZR|1|2A|U|1961
6CZR|1|2A|C|1962
6CZR|1|2A|5MC|1963
6CZR|1|2A|U|1964
6CZR|1|2A|U|1965
6CZR|1|2A|G|1966
*
6CZR|1|2A|C|1982
6CZR|1|2A|5MC|1983
6CZR|1|2A|U|1984
6CZR|1|2A|G|1985

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA