IL_6CZR_352

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGUAG*CGCC

Length

9 nucleotides

Bulged bases

6CZR|1|1A|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_352 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.352

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6CZR|1|1A|G|1532
6CZR|1|1A|G|1533
6CZR|1|1A|U|1534
6CZR|1|1A|A|1535
6CZR|1|1A|G|1536
*
6CZR|1|1A|C|1544
6CZR|1|1A|G|1545
6CZR|1|1A|C|1546
6CZR|1|1A|C|1547

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2