IL_6D8M_010

3D structure

PDB id

6D8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant A125U/G126U

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

6D8M|1|B|A|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D8M_010 not in the Motif Atlas

Geometric match to IL_4V88_409

Geometric discrepancy: 0.2638

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6D8M|1|B|G|110
6D8M|1|B|G|111
*
6D8M|1|B|C|209
6D8M|1|B|A|210
6D8M|1|B|C|211

Current chains

Chain B

Group I self-splicing intron

Nearby chains

Chain A

Group I self-splicing intron