IL_6D90_036

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_036 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.2429

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6D90|1|2|G|692
6D90|1|2|A|693
6D90|1|2|G|694
6D90|1|2|C|695
*
6D90|1|2|G|731
6D90|1|2|U|732
6D90|1|2|C|733
6D90|1|2|C|734

Current chains

Chain 2

18S rRNA

Nearby chains

Chain II

eS7

Chain XX

uS8