IL_6D90_047

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAUUG*CAAGAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_047 not in the Motif Atlas

Geometric match to IL_4LFB_030

Geometric discrepancy: 0.2072

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6D90|1|2|G|942
6D90|1|2|U|943
6D90|1|2|A|944
6D90|1|2|U|945
6D90|1|2|U|946
6D90|1|2|G|947
*
6D90|1|2|C|979
6D90|1|2|A|980
6D90|1|2|A|981
6D90|1|2|G|982
6D90|1|2|A|983
6D90|1|2|C|984

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

uL2

Chain CC

eS1

Chain PP

uS11