IL_6D90_067

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6D90|1|2|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_067 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.2782

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6D90|1|2|C|1337
6D90|1|2|G|1338
*
6D90|1|2|C|1488
6D90|1|2|A|1489
6D90|1|2|G|1490

Current chains

Chain 2

18S rRNA

Nearby chains

Chain DD

uS5

Chain EE

uS3

Chain RR

uS9

Chain VV

uS10

Chain ee

eS29

Chain jj

eRF1