IL_6D90_100

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6D90|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_100 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2054

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6D90|1|5|C|118
6D90|1|5|G|119
6D90|1|5|A|120
6D90|1|5|A|121
*
6D90|1|5|U|152
6D90|1|5|G|153

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

eL8

Chain N

eL15

Chain h

eL35