IL_6D90_120
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCGGAU*ACCGC
- Length
- 11 nucleotides
- Bulged bases
- 6D90|1|5|A|509
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D90_120 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3996
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6D90|1|5|G|505
6D90|1|5|C|506
6D90|1|5|G|507
6D90|1|5|G|508
6D90|1|5|A|509
6D90|1|5|U|510
*
6D90|1|5|A|649
6D90|1|5|C|650
6D90|1|5|C|651
6D90|1|5|G|652
6D90|1|5|C|653
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain L
- eL13
- Chain Q
- rL18
- Chain a
- uL15
Coloring options: