IL_6D90_211

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUGA*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_211 not in the Motif Atlas

Geometric match to IL_5LQO_002

Geometric discrepancy: 0.2621

The information below is about IL_5LQO_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6D90|1|5|A|3949
6D90|1|5|U|3950
6D90|1|5|G|3951
6D90|1|5|A|3952
*
6D90|1|5|U|4060
6D90|1|5|G|4061
6D90|1|5|A|4062
6D90|1|5|U|4063

Current chains

Chain 5

28S rRNA

Nearby chains

Chain K

uL1

Chain i

eL36