3D structure

PDB id
6D90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAUC*GAC
Length
7 nucleotides
Bulged bases
6D90|1|5|A|4292
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D90_218 not in the Motif Atlas
Geometric match to IL_7A0S_107
Geometric discrepancy: 0.2804
The information below is about IL_7A0S_107
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_71625.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

6D90|1|5|G|4291
6D90|1|5|A|4292
6D90|1|5|U|4293
6D90|1|5|C|4294
*
6D90|1|5|G|4316
6D90|1|5|A|4317
6D90|1|5|C|4318

Current chains

Chain 5
28S rRNA

Nearby chains

Chain T
eL21
Chain b
eL29
Chain o
eL42

Coloring options:


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