IL_6D90_218
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUC*GAC
- Length
- 7 nucleotides
- Bulged bases
- 6D90|1|5|A|4292
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D90_218 not in the Motif Atlas
- Geometric match to IL_7A0S_107
- Geometric discrepancy: 0.2804
- The information below is about IL_7A0S_107
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_71625.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
6D90|1|5|G|4291
6D90|1|5|A|4292
6D90|1|5|U|4293
6D90|1|5|C|4294
*
6D90|1|5|G|4316
6D90|1|5|A|4317
6D90|1|5|C|4318
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain T
- eL21
- Chain b
- eL29
- Chain o
- eL42
Coloring options: