IL_6D90_246

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGG*CCCUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_246 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3972

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6D90|1|5|G|4896
6D90|1|5|G|4897
6D90|1|5|G|4898
6D90|1|5|G|4899
*
6D90|1|5|C|4920
6D90|1|5|C|4921
6D90|1|5|C|4922
6D90|1|5|U|4923
6D90|1|5|C|4924

Current chains

Chain 5

28S rRNA

Nearby chains

Chain M

eL14