IL_6D90_261

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAU*AUAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_261 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2211

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6D90|1|2|G|23
6D90|1|2|C|24
6D90|1|2|A|25
6D90|1|2|U|26
*
6D90|1|2|A|648
6D90|1|2|U|649
6D90|1|2|A|650
6D90|1|2|U|651

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain YY

uS12