IL_6D90_263

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAU*ACGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_263 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3924

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6D90|1|2|G|108
6D90|1|2|U|109
6D90|1|2|U|110
6D90|1|2|A|111
6D90|1|2|U|112
*
6D90|1|2|A|349
6D90|1|2|C|350
6D90|1|2|G|351
6D90|1|2|U|352
6D90|1|2|C|353

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain JJ

eS8

Chain MM

uS17