IL_6D90_269

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUACA*UGUAAU

Length

11 nucleotides

Bulged bases

6D90|1|2|A|555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_269 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.2851

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6D90|1|2|A|529
6D90|1|2|U|530
6D90|1|2|A|531
6D90|1|2|C|532
6D90|1|2|A|533
*
6D90|1|2|U|551
6D90|1|2|G|552
6D90|1|2|U|553
6D90|1|2|A|554
6D90|1|2|A|555
6D90|1|2|U|556

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain ff

eS30