IL_6D90_296

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAG*CACCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_296 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3247

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

6D90|1|5|C|460
6D90|1|5|G|461
6D90|1|5|G|462
6D90|1|5|A|463
6D90|1|5|G|464
*
6D90|1|5|C|691
6D90|1|5|A|692
6D90|1|5|C|693
6D90|1|5|C|694
6D90|1|5|G|695

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain r

eL28