IL_6D90_327

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGC*GGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_327 not in the Motif Atlas

Geometric match to IL_7LO9_003

Geometric discrepancy: 0.3363

The information below is about IL_7LO9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36940.4

Basepair signature

cWW-tSH-tWW-cWW

Number of instances in this motif group

5

Unit IDs

6D90|1|5|G|4637
6D90|1|5|U|4638
6D90|1|5|G|4639
6D90|1|5|C|4640
*
6D90|1|5|G|4659
6D90|1|5|G|4660
6D90|1|5|G|4661
6D90|1|5|C|4662

Current chains

Chain 5

28S rRNA

Nearby chains

Chain W

eL24

Chain d

eL31