IL_6D90_332
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUAGUACU*GGGAAUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D90_332 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.3247
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6D90|1|7|G|71
6D90|1|7|U|72
6D90|1|7|U|73
6D90|1|7|A|74
6D90|1|7|G|75
6D90|1|7|U|76
6D90|1|7|A|77
6D90|1|7|C|78
6D90|1|7|U|79
*
6D90|1|7|G|97
6D90|1|7|G|98
6D90|1|7|G|99
6D90|1|7|A|100
6D90|1|7|A|101
6D90|1|7|U|102
6D90|1|7|A|103
6D90|1|7|C|104
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- uL18
- Chain F
- uL30
- Chain I
- uL16
- Chain S
- eL20
Coloring options: