IL_6D90_336

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6D90|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_336 not in the Motif Atlas

Homologous match to IL_8CRE_400

Geometric discrepancy: 0.156

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6D90|1|2|G|145
6D90|1|2|G|146
6D90|1|2|A|147
6D90|1|2|U|148
6D90|1|2|A|149
6D90|1|2|A|150
6D90|1|2|C|151
*
6D90|1|2|G|167
6D90|1|2|C|168
6D90|1|2|U|169
6D90|1|2|A|170
6D90|1|2|A|171
6D90|1|2|U|172
6D90|1|2|A|173
6D90|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain HH

eS6

Chain W

eL24

Chain ZZ

eS24