IL_6D90_361
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D90_361 not in the Motif Atlas
- Homologous match to IL_8CRE_093
- Geometric discrepancy: 0.2543
- The information below is about IL_8CRE_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88116.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6D90|1|5|U|3715
6D90|1|5|C|3716
6D90|1|5|A|3717
6D90|1|5|A|3718
6D90|1|5|A|3719
6D90|1|5|G|3720
6D90|1|5|U|3721
*
6D90|1|5|A|3732
6D90|1|5|A|3733
6D90|1|5|U|3734
6D90|1|5|G|3735
6D90|1|5|A|3736
6D90|1|5|A|3737
6D90|1|5|G|3738
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 4
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain i
- eL36
- Chain o
- eL42
Coloring options: