IL_6D90_367
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 6D90|1|5|A|4548
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D90_367 not in the Motif Atlas
- Homologous match to IL_9PN5_109
- Geometric discrepancy: 0.3484
- The information below is about IL_9PN5_109
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 175
Unit IDs
6D90|1|5|C|4537
6D90|1|5|G|4538
*
6D90|1|5|C|4547
6D90|1|5|A|4548
6D90|1|5|G|4549
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain jj
- eRF1
Coloring options: