IL_6D9J_004

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

6D9J|1|2|U|44, 6D9J|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_004 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.3301

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6D9J|1|2|G|41
6D9J|1|2|A|42
6D9J|1|2|U|43
6D9J|1|2|U|44
6D9J|1|2|A|45
6D9J|1|2|A|46
6D9J|1|2|G|47
*
6D9J|1|2|C|479
6D9J|1|2|G|480
6D9J|1|2|C|481

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 9

eEF2

Chain YY

uS12