IL_6D9J_012

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6D9J|1|2|U|172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_012 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.2586

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6D9J|1|2|G|145
6D9J|1|2|G|146
6D9J|1|2|A|147
6D9J|1|2|U|148
6D9J|1|2|A|149
6D9J|1|2|A|150
6D9J|1|2|C|151
*
6D9J|1|2|G|167
6D9J|1|2|C|168
6D9J|1|2|U|169
6D9J|1|2|A|170
6D9J|1|2|A|171
6D9J|1|2|U|172
6D9J|1|2|A|173
6D9J|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain HH

eS6

Chain W

eL24

Chain ZZ

eS24