IL_6D9J_013

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_013 not in the Motif Atlas

Geometric match to IL_5J7L_327

Geometric discrepancy: 0.3886

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6D9J|1|2|U|152
6D9J|1|2|G|153
6D9J|1|2|U|154
6D9J|1|2|G|155
*
6D9J|1|2|U|163
6D9J|1|2|A|164
6D9J|1|2|G|165
6D9J|1|2|A|166

Current chains

Chain 2

18S rRNA

Nearby chains

Chain HH

eS6

Chain W

eL24

Chain ZZ

eS24