IL_6D9J_022

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6D9J|1|2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_022 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.3944

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6D9J|1|2|G|411
6D9J|1|2|G|412
6D9J|1|2|G|413
*
6D9J|1|2|C|424
6D9J|1|2|G|425
6D9J|1|2|A|426
6D9J|1|2|U|427
6D9J|1|2|U|428
6D9J|1|2|C|429

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain KK

uS4

Chain YY

uS12