IL_6D9J_025

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_025 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.2224

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6D9J|1|2|C|491
6D9J|1|2|C|492
6D9J|1|2|A|493
6D9J|1|2|C|494
6D9J|1|2|U|495
*
6D9J|1|2|A|508
6D9J|1|2|G|509

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain KK

uS4

Chain ZZ

eS24