IL_6D9J_027

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUA*UAAU

Length

7 nucleotides

Bulged bases

6D9J|1|2|A|555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_027 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2876

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6D9J|1|2|A|529
6D9J|1|2|U|530
6D9J|1|2|A|531
*
6D9J|1|2|U|553
6D9J|1|2|A|554
6D9J|1|2|A|555
6D9J|1|2|U|556

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain ff

eS30