IL_6D9J_030

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_030 not in the Motif Atlas

Geometric match to IL_5AOX_003

Geometric discrepancy: 0.3689

The information below is about IL_5AOX_003

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6D9J|1|2|U|566
6D9J|1|2|C|567
6D9J|1|2|C|568
6D9J|1|2|A|569
*
6D9J|1|2|U|581
6D9J|1|2|U|582
6D9J|1|2|A|583
6D9J|1|2|A|584

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain ZZ

eS24