IL_6D9J_036

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGCG*CGUCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_036 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3037

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6D9J|1|2|G|692
6D9J|1|2|A|693
6D9J|1|2|G|694
6D9J|1|2|C|695
6D9J|1|2|G|696
*
6D9J|1|2|C|730
6D9J|1|2|G|731
6D9J|1|2|U|732
6D9J|1|2|C|733
6D9J|1|2|C|734

Current chains

Chain 2

18S rRNA

Nearby chains

Chain II

eS7

Chain XX

uS8