IL_6D9J_041

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

6D9J|1|2|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_041 not in the Motif Atlas

Geometric match to IL_4V88_425

Geometric discrepancy: 0.3846

The information below is about IL_4V88_425

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53064.1

Basepair signature

cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6D9J|1|2|G|807
6D9J|1|2|A|808
6D9J|1|2|A|809
6D9J|1|2|A|810
6D9J|1|2|A|811
6D9J|1|2|A|812
6D9J|1|2|A|813
6D9J|1|2|U|814
6D9J|1|2|U|815
*
6D9J|1|2|A|849
6D9J|1|2|C|850
6D9J|1|2|C|851
6D9J|1|2|G|852
6D9J|1|2|C|853
6D9J|1|2|A|854
6D9J|1|2|G|855
6D9J|1|2|C|856

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain KK

uS4

Chain MM

uS17

Chain XX

uS8