IL_6D9J_063
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 6D9J|1|2|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_063 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.2537
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6D9J|1|2|U|1329
6D9J|1|2|G|1330
6D9J|1|2|C|1331
6D9J|1|2|A|1332
6D9J|1|2|U|1333
*
6D9J|1|2|A|1498
6D9J|1|2|U|1499
6D9J|1|2|G|1500
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 9
- eEF2
- Chain EE
- uS3
- Chain LL
- eS10
- Chain VV
- uS10
- Chain ee
- eS29
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