IL_6D9J_066

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_066 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.2189

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6D9J|1|2|U|1347
6D9J|1|2|G|1348
6D9J|1|2|G|1349
*
6D9J|1|2|C|1380
6D9J|1|2|G|1381
6D9J|1|2|A|1382

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BB

uS2

Chain DD

uS5

Chain EE

uS3

Chain SS

eS17