IL_6D9J_068

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_068 not in the Motif Atlas

Geometric match to IL_6DTD_003

Geometric discrepancy: 0.274

The information below is about IL_6DTD_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6D9J|1|2|C|1363
6D9J|1|2|U|1364
6D9J|1|2|G|1365
*
6D9J|1|2|C|1374
6D9J|1|2|G|1375

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BB

uS2

Chain SS

eS17