IL_6D9J_071

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6D9J|1|2|C|1403, 6D9J|1|2|U|1404, 6D9J|1|2|U|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_071 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.347

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6D9J|1|2|A|1402
6D9J|1|2|C|1403
6D9J|1|2|U|1404
6D9J|1|2|A|1405
*
6D9J|1|2|U|1441
6D9J|1|2|U|1442
6D9J|1|2|C|1443
6D9J|1|2|U|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain RR

uS9

Chain VV

uS10

Chain hh

RACK1