IL_6D9J_078
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6D9J|1|2|A|1824, 6D9J|1|2|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_078 not in the Motif Atlas
- Geometric match to IL_6AZ4_001
- Geometric discrepancy: 0.3953
- The information below is about IL_6AZ4_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69145.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6D9J|1|2|C|1708
6D9J|1|2|G|1709
6D9J|1|2|C|1710
6D9J|1|2|U|1711
*
6D9J|1|2|A|1822
6D9J|1|2|A|1823
6D9J|1|2|A|1824
6D9J|1|2|A|1825
6D9J|1|2|G|1826
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain 9
- eEF2
- Chain YY
- uS12
- Chain n
- eL41
Coloring options: