3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGGAU*AGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_085 not in the Motif Atlas
Homologous match to IL_4V88_474
Geometric discrepancy: 0.4756
The information below is about IL_4V88_474
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_95716.2
Basepair signature
cWW-cWW-tHS-tHS-tSH-cWW
Number of instances in this motif group
18

Unit IDs

6D9J|1|2|C|1742
6D9J|1|2|G|1743
6D9J|1|2|G|1744
6D9J|1|2|A|1745
6D9J|1|2|U|1746
*
6D9J|1|2|A|1788
6D9J|1|2|G|1789
6D9J|1|2|A|1790
6D9J|1|2|A|1791
6D9J|1|2|G|1792

Current chains

Chain 2
18S rRNA

Nearby chains

Chain HH
eS6
Chain JJ
eS8
Chain W
eL24

Coloring options:


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