IL_6D9J_085

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_085 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.4756

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6D9J|1|2|C|1742
6D9J|1|2|G|1743
6D9J|1|2|G|1744
6D9J|1|2|A|1745
6D9J|1|2|U|1746
*
6D9J|1|2|A|1788
6D9J|1|2|G|1789
6D9J|1|2|A|1790
6D9J|1|2|A|1791
6D9J|1|2|G|1792

Current chains

Chain 2

18S rRNA

Nearby chains

Chain HH

eS6

Chain JJ

eS8

Chain W

eL24